High-throughput next generation sequencing: methods and applications/ edited by Young Min Kwon, Steven C. Ricke.

Includes bibliographical references and index.

Helicos single-molecule sequencing of bacterial genomes / Kathleen E. Steinmann ... [et al.] -- Whole-genome sequencing of unculturable bacterium using whole-genome amplification / Yuichi Hongoh and Atsushi Toyoda -- RNA sequencing and quantitation using the helicos genetic analysis system / Tal Raz ... [et al.] -- Transcriptome profiling using single-molecule direct RNA sequencing / Fatih Ozsolak and Patrice M. Milos -- Discovery of bacterial sRNAs by high-throughput sequencing / Jane M. Liu and Andrew Camilli -- Identification of virus encoding microRNAs using 454 FLX sequencing platform / Byung-Whi Kong -- Ribosomal RNA depletion for massively parallel bacterial RNA-sequencing applications / Zhoutao Chen and Xiaoping Duan -- Integrating high-throughput pyrosequencing and quantitative real-time PCR to analyze complex microbial communities / Husen Zhang ... [et al.] -- Tag-encoded FLX amplicon pyrosequencing for the elucidation of microbial and functional gene diversity in any environment / Yan Sun, Randall D. Wolcott, and Scot E. Dowd -- Pyrosequencing of chaperonin-60 (cpn60) amplicons as a means of determining microbial community composition / John Schellenberg ... [et al.] -- Prescreening of microbial populations for the assessment of sequencing potential / Irene B. Hanning and Steven C. Ricke -- Metagenomics / Jack A. Gilbert ... [et al.] -- Metagenomic analysis of intestinal microbiomes in chickens / Taejoong Kim and Egbert Mundt -- Gene expression profiling : metatranscriptomics / Jack A. Gilbert and Margaret Hughes -- High-throughput insertion tracking by deep sequencing for the analysis of bacterial pathogens / Sandy M.S. Wong ... [et al.] -- Determining DNA methylation profiles using sequencing / Suhua Feng ... [ et al.] -- Preparation of next-generation sequencing libraries using Nextera technology : simultaneous DNA fragmentation and adaptor tagging by in vitro transposition / Nicholas Caruccio -- Amplification-free library preparation for paired-end illumina sequencing / Iwanka Kozarewa and Daniel J. Turner -- Target-enrichment through amplification of hairpin-ligated universal targets for next-generation sequencing analysis / Pallavi Singh, Rajesh Nayak, and Young Min Kwon -- 96-plex molecular barcoding for the illumina genome analyzer / Iwanka Kozarewa and Daniel J. Turner.