TY  - BOOK
AU  - Dwyer,Rex A.
TI  - Genomic perl: from bioinformatics basics to working code
SN  - 052180177X
U1  - 572.80285 
PY  - 2003///
CY  - Cambridge, UK, New York
PB  - Cambridge University Press
KW  - Perl (Computer program language)
KW  - Molecular biology
KW  - Data processing
KW  - Bioinformatics
N1  - The Central Dogma --
DNA and RNA --
Chromosomes --
Proteins --
The Central Dogma --
Transcription and Translation in Perl --
RNA Secondary Structure --
Messenger and Catalytic RNA --
Levels of RNA Structure --
Constraints on Secondary Structure --
RNA Secondary Structures in Perl --
Counting Hydrogen Bonds --
Folding RNA --
Comparing DNA Sequences --
DNA Sequencing and Sequence Assembly --
Alignments and Similarity --
Alignment and Similarity in Perl --
Predicting Species: Statistical Models --
Perl Subroutine Libraries --
Species Prediction in Perl --
Substitution Matrices for Amino Acids --
More on Homology --
Deriving Substitution Matrices from Alignments --
Substitution Matrices in Perl --
The PAM Matrices --
PAM Matrices in Perl --
Sequence Databases --
FASTA Format --
GenBank Format --
GenBank's Feature Locations --
Reading Sequence Files in Perl --
Object-Oriented Programming in Perl --
The SimpleReader Class --
Hiding File Formats with Method Inheritance --
Local Alignment and the BLAST Heuristic --
The Smith-Waterman Algorithm --
The BLAST Heuristic --
Preprocessing the Query String --
Scanning the Target String --
Implementing BLAST in Perl --
Statistics of BLAST Database Searches --
BLAST Scores for Random DNA --
BLAST Scores for Random Residues --
BLAST Statistics in Perl --
Interpreting BLAST Output --
Multiple Sequence Alignment I --
Extending the Needleman-Wunsch Algorithm --
NP-Completeness --
Alignment Merging: A Building Block for Heuristics --
Merging Alignments in Perl --
Finding a Good Merge Order
ER  -