Functional genomics : methods and protocols / edited by Michael J. Brownstein and Arkady B. Khodursky.

Fabrication of cDNA Microarrays
Charlie C. Xiang and Michael J. Brownstein
Nylon cDNA Expression Arrays
George Jokhadze, Stephen Chen, Claire Granger,
and Alex Chenchik
Plastic Microarrays: A Novel Array Support Combining
the Benefits of Macro- and Microarrays
Alexander Munishkin, Konrad Faulstich,
VIssarion AivazachviU, Claire Granger, and Alex Chenchik
Preparing Fluorescent Probes for Microarray Studies
Charlie C. XIang and Michael J. Brownstein
Escherichia coii Spotted Double-Strand DNA Microarrays:
RNA Extraction, Labeling, Hybridization, Quality Control,
and Data Management
Arkady B. Khodursky, Jonathan A. Bernstein, Brian J. Peter,
Virgil Rhodius, VolkerF. Wendlsch, and Daniel P. ZImmer
Isolation of Polysomal RNA for Microarray Analysis
Yoav Arava
Parallel Analysis of Gene Copy Number and Expression Using
cDNA Microarrays
Jonathan R. Pollack
Genome-wide Mapping of Protein-DNA Interactions by Chromatin
Immunoprecipitation and DNA Microarray Hybridization
Jason D. Lieb
Statistical Issues in cDNA Microarray Data Analysis
Gordon K. Smyth, Yee Hwa Yang, and Terry Speed
Experimental Design to Make the Most of Microarray Studies
M. Kathleen Kerr
Statistical Methods for Identifying Differentially Expressed
Genes in DNA Microarrays
John D. Storey and Robert Tibshirani
Detecting Stable Clusters Using Principal Component Analysis
Asa Ben-Hur and Isabella Guyon
Clustering in Life Sciences
YIng Zhao and George Karypis
A Primer on the Visualization of Microarray Data
Paul Fawcett
Microarray Databases; Storage and Retrieval of Microarray Data
Gavin Sherlock and Catherine A. Ball