Normal view MARC view ISBD view

Genomic perl: from bioinformatics basics to working code / Rex A. Dwyer

By: Dwyer, Rex AMaterial type: Text

TextPublication details: Cambridge, UK ; New York : Cambridge University Press, 2003Description: xvii, 334 pISBN: 052180177XSubject(s): Perl (Computer program language) | Molecular biology -- Data processing | BioinformaticsDDC classification: 572.80285

Contents:

The Central Dogma -- DNA and RNA -- Chromosomes -- Proteins -- The Central Dogma -- Transcription and Translation in Perl -- RNA Secondary Structure -- Messenger and Catalytic RNA -- Levels of RNA Structure -- Constraints on Secondary Structure -- RNA Secondary Structures in Perl -- Counting Hydrogen Bonds -- Folding RNA -- Comparing DNA Sequences -- DNA Sequencing and Sequence Assembly -- Alignments and Similarity -- Alignment and Similarity in Perl -- Predicting Species: Statistical Models -- Perl Subroutine Libraries -- Species Prediction in Perl -- Substitution Matrices for Amino Acids -- More on Homology -- Deriving Substitution Matrices from Alignments -- Substitution Matrices in Perl -- The PAM Matrices -- PAM Matrices in Perl -- Sequence Databases -- FASTA Format -- GenBank Format -- GenBank's Feature Locations -- Reading Sequence Files in Perl -- Object-Oriented Programming in Perl -- The SimpleReader Class -- Hiding File Formats with Method Inheritance -- Local Alignment and the BLAST Heuristic -- The Smith-Waterman Algorithm -- The BLAST Heuristic -- Preprocessing the Query String -- Scanning the Target String -- Implementing BLAST in Perl -- Statistics of BLAST Database Searches -- BLAST Scores for Random DNA -- BLAST Scores for Random Residues -- BLAST Statistics in Perl -- Interpreting BLAST Output -- Multiple Sequence Alignment I -- Extending the Needleman-Wunsch Algorithm -- NP-Completeness -- Alignment Merging: A Building Block for Heuristics -- Merging Alignments in Perl -- Finding a Good Merge Order.

Tags from this library: No tags from this library for this title. Log in to add tags.

Average rating: 0.0 (0 votes)

Holdings ( 1 )
Title notes ( 1 )
Comments ( 0 )

Holdings
Item type	Current library	Call number	Status	Date due	Barcode	Item holds
General Books	Central Library, Sikkim University	572.80285 DWY/G (Browse shelf(Opens below))	Available		46611

Total holds: 0

The Central Dogma --
DNA and RNA --
Chromosomes --
Proteins --
The Central Dogma --
Transcription and Translation in Perl --
RNA Secondary Structure --
Messenger and Catalytic RNA --
Levels of RNA Structure --
Constraints on Secondary Structure --
RNA Secondary Structures in Perl --
Counting Hydrogen Bonds --
Folding RNA --
Comparing DNA Sequences --
DNA Sequencing and Sequence Assembly --
Alignments and Similarity --
Alignment and Similarity in Perl --
Predicting Species: Statistical Models --
Perl Subroutine Libraries --
Species Prediction in Perl --
Substitution Matrices for Amino Acids --
More on Homology --
Deriving Substitution Matrices from Alignments --
Substitution Matrices in Perl --
The PAM Matrices --
PAM Matrices in Perl --
Sequence Databases --
FASTA Format --
GenBank Format --
GenBank's Feature Locations --
Reading Sequence Files in Perl --
Object-Oriented Programming in Perl --
The SimpleReader Class --
Hiding File Formats with Method Inheritance --
Local Alignment and the BLAST Heuristic --
The Smith-Waterman Algorithm --
The BLAST Heuristic --
Preprocessing the Query String --
Scanning the Target String --
Implementing BLAST in Perl --
Statistics of BLAST Database Searches --
BLAST Scores for Random DNA --
BLAST Scores for Random Residues --
BLAST Statistics in Perl --
Interpreting BLAST Output --
Multiple Sequence Alignment I --
Extending the Needleman-Wunsch Algorithm --
NP-Completeness --
Alignment Merging: A Building Block for Heuristics --
Merging Alignments in Perl --
Finding a Good Merge Order.

There are no comments on this title.

to post a comment.