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<br/>1 A Changing Landscape of Fungal Genomics 3<br/>Igor V. Grigoriev<br/>2 Repeated Elements in Filamentous Fungi with a Focus<br/>on Wood-Decay Fungi 21<br/>Claude Murat,Thibaut Payen, Denis Petitpierre, and Jessy Labbe<br/>Section 2 Saprotrophic Fungi 41<br/>3 Wood Decay 43<br/>Dan Cullen<br/>4 Aspergilli and Biomass-Degrading Fungi 63<br/>Isabelle Benoit, Ronald P. de Vries, Scott E. Baker,<br/>and Sue A. Karagiosis<br/>5 Ecological Genomics of Trichoderma 89<br/>Irina S. Druzhinina and Christian P. Kubicek<br/>Section 3 Plant-Interacting Fungi 117<br/>6 Dothideomycetes: Plant Pathogens, Saprobes, and Extremophiles 119<br/>Stephen B. Goodwin<br/>7 Biotrophic Fungi (Powdery Mildews, Rusts, and Smuts) 149<br/>Sebastien Duplessis, Pietro D. Spanu, and Jan Schirawski<br/>8 The Mycorrhizal Symbiosis Genomics 169<br/>Francis Martin and Annegret Kohler<br/>9 Lichen Genomics: Prospects and Progress 191<br/>Martin Grube, Gabriele Berg, Olafur S. Andresson,<br/>Oddur Vilhelmsson, Paul S. Dyer, and Vivian P.W. Miao<br/>Vi CONTENTS<br/>Section 4 Animal-Interacting Fungi 213<br/>10 Ecogenomics of Human and Animal Basidiomycetous<br/>Yeast Pathogens 215<br/>Sheng Sun, Ferry Hagen, Jun Xu, Tom Dawson, Joseph Heitman,<br/>James Kronstad, Charles Saunders, and Teun Boekhout<br/>11 Genomics Of Entomopathogenic Fungi 243<br/>Chengshu Wang and Raymond J. St. Leger<br/>12 Ecological Genomics of the Microsporidia 261<br/>Nicolas Corradi and Patrick J. Keeling<br/>Section 5 Metagenomics and Biogeography of Fungi 279<br/>13 Metagenomics for Study of Fungal Ecology 281<br/>Bjorn D. Lindahl and Cheryl R. Kuske<br/>14 Metatranscriptomics of Soil Eukaryotic Communities 305<br/>Laurence Fraissinet-Tachet, Roland Marmeisse,<br/>Lucie Zinger, and Patricia Luis<br/>15 Fungi in Deep-Sea Environments and Metagenomics 325<br/>Stephane Mah^, Vanessa Redou, Thomas Le Calvez,<br/>Philippe Vandenkoornhuyse, and Gaetan Burgaud<br/>16 The Biodiversity, Ecology, and Biogeography<br/>Index<br/>of Ascomycetous Yeasts<br/>Marc-Andre Lachance |
