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SECTION I INTRODUCTION TO ENVIRONMENTAL MICROBIOLOGY<br/>VOLUME EDITOR: JAY L. GARLAND<br/>1. Introduction to Environmental Microbiology Christon J. Hurst<br/>2. Neighborhoods and Communities: No Microbe Is an Island Christon J. Hurst<br/>3. Prokaryotic Diversity: Form, Ecophysiology, and Habitat Frederick S. <br/>Colwell and Edward R. Leadbetter<br/>SECTION II GENERAL METHODOLOGY<br/>VOLUME EDITOR: JAY L. GARLAND, SECTION EDITOR: SEAN O'CONNELL<br/>4. Overview: General Methodology Jay L. Garland<br/>5. Analytical Imaging and Microscopy Techniques J. R. Lawrence, D. R. <br/>Korber, and T. R. Neu<br/>6. Cultivation of Bacteria and Fungi Ralph S. Tanner<br/>7. Cultivation of Algae and Protozoa John G. Day, Undine Achilles-Day, Susan <br/>Brown, and Alan Warren<br/>8. Cultivation and Assay of Animal Viruses Pierre Payment<br/>9. Cultivation of Microbial Consortia and Communities Gideon M. Wolfaardt, <br/>Darren R. Korber, and John R. <br/>Lawrence<br/>10. Lipid Analyses for Viable Microbial Biomass, Community Composition, <br/>Metabolic Status, and In Situ Metabolism <br/>David B. Hedrick, Aaron D. Peacock, and David C. White<br/>11. Physiological Profiling of Microbial Communities Jay L. Garland, Colin D. <br/>Campbell, and Aaron L. Mills<br/>12. Molecular Approaches for the Measurement of Density, Diversity, and <br/>Phylogeny Wen-Tso Liu and David A. Stahl<br/>13. Phylogenetic and Genomic Analysis Dirk Gevers and Tom Coenye<br/>14. Bioreporters, Biosensors, and Microprobes Robert S. Burlage<br/>15. Ecology at Long-Term Research Sites: Integrating Microbes and Ecosystems <br/>John E. Hobbie, Michele Bahr, and <br/>Anna-Louise Reysenbach<br/>16. Quality Assurance A. J. Cross-Smiecinski<br/>17. Issues of Study Design and Statistical Analysis for Environmental <br/>Microbiology Kenneth M. Portier and Ronald <br/>Corstanje<br/>SECTION III WATER MICROBIOLOGY IN PUBLIC HEALTH<br/>VOLUME EDITOR: CHRISTON J. HURST, SECTION EDITOR: GARY A. TORANZOS<br/>18. Overview of Water Microbiology as It Relates to Public Health Christon J. <br/>Hurst<br/>19. Waterborne Transmission of Infectious Agents Christine L. Moe<br/>20. Detection of Microorganisms in Environmental Freshwaters and Drinking <br/>Waters Gary A. Toranzos, Gordon A. <br/>McFeters, Juan Jose Borrego, and Marion Savill<br/>21. Detection of Protozoan Parasites in Source and Finished Drinking Water <br/>Frank W. Schaefer III<br/>22. Microbial Indicators of Marine Recreational Water Quality Stephen B. <br/>Weisberg, Rachel T. Noble, and John F. <br/>Griffith<br/>23. Detection of Viruses in Environmental Waters, Wastewater, and Wastewater <br/>Biosolids Christon J. Hurst and Kelly A. <br/>Reynolds<br/>24. Detection of Bacterial Pathogens in Wastewater and Sludge Richard E. <br/>Danielson and Robert C. Cooper<br/>25. Detection of Pathogenic Bacteria, Viruses, and Parasitic Protozoa in <br/>Shellfish Lee-Ann Jaykus<br/>26. Control of Microorganisms in Source Water and Drinking Water Morteza <br/>Abbaszadegan and Aaron B. Margolin<br/>27. Assessing the Efficiency of Wastewater Treatment Wesley O. Pipes and <br/>James T. Zmuda<br/>28. Modeling the Fate of Microorganisms in Water, Wastewater, and Soil <br/>Christon J. Hurst<br/>29. Estimating the Risk of Infectious Disease Associated with Pathogens in <br/>Drinking Water Christon J. Hurst<br/>30. Toxic Photosynthetic Microbes Wesley Clinton Jackson, Jr.<br/>SECTION IV AQUATIC ENVIRONMENTS<br/>VOLUME EDITOR: CHRISTON J. HURST, SECTION EDITOR: MEREDITH A. J. HULLAR<br/>31. Advances in Aquatic Microbial Ecology Meredith Hullar<br/>32. Cultivating Microorganisms from Dilute Aquatic Environments: Melding <br/>Traditional Methodology with New Cultivation <br/>Techniques and Molecular Methods Jamie W. Becker, Marina L. Brandon, and <br/>Michael S. Rappe<br/>33. Primary Productivity and Producers Hans W. Paerl<br/>34. Bacterial Secondary Productivity Gerardo Chin-Leo and Colleen T. Evans<br/>35. Community Structure: Bacteria and Archaea Jed A. Fuhrman<br/>36. Viral Community Structure Alexander I. Culley and Curtis A. Suttle<br/>37. Protistan Community Structure David A. Caron and Astrid Schnetzer<br/>38. Decomposition and Fungal Community Structure in Aquatic Environments <br/>Felix Barlocher<br/>39. Bacterial Organic Carbon Cycling in Aquatic Environments Matthew T. <br/>Cottrell<br/>40. Environmental Genomics of C1 Metabolism Marina G. Kalyuzhnaya, Olivier <br/>Nercessian, Mary E. Lidstrom, and <br/>Ludmila Chistoserdova<br/>41. Sulfur Cycling Mark E. Hines, Pieter T. Visscher, Andreas P. Teske, and <br/>Richard Devereux<br/>42. Nitrogen Cycling in Aquatic Environments Bess B. Ward<br/>43. The Marine Phosphorus Cycle David M. Karl<br/>44. Microbial Metal Cycling in Aquatic Environments Eric E. Roden<br/>45. Biofilms on Living Surfaces Jeremy S. Webb, Mike Taylor, Scott Rice, <br/>Torsten Thomas, Dhana Rao, Diane <br/>McDougald, and Staffan Kjelleberg<br/>46. Extreme High-Pressure Marine Environments Jody W. Deming<br/>SECTION V SOIL, RHIZOSPHERE, AND PHYLLOSPHERE<br/>VOLUME EDITOR: DAVID A. LIPSON<br/>47. Introduction and Overview: Soil, Rhizosphere, and Phyllosphere David <br/>Lipson<br/>48. Surface Soil Microbial Sampling Methods David B. Knaebel<br/>49. Application of Phylogenetic Techniques in Studies of Soil Microbial <br/>Communities Ryan T. Jones, Elizabeth K. <br/>Costello, and Andrew P. Martin<br/>50. Sampling Viruses from Soil Christon J. Hurst and Kelly A. Reynolds<br/>51. Isolation, Culture, and Detection of Arbuscular Mycorrhizal Fungi David <br/>G. Sylvia, Wittaya Kaonongbua, and James <br/>D. Bever<br/>52. Isolation, In Planta Detection, and Uses of Endophytic Bacteria for Plant <br/>Protection Charles W. Bacon and Dorothy <br/>M. Hinton<br/>53. Methods of Soil Microbial Community Analysis Andrew Ogram, Hector Castro, <br/>and Ashvini Chauhan<br/>54. Microarrays: Design and Use for Agricultural and Environmental <br/>Applications Scot E. Dowd, Hiroshi Ishizaki, and <br/>Jeanette Thurston Enriquez<br/>55. PCR: Agricultural and Environmental Applications for Soil Microbes Scot <br/>E. Dowd and Ian L. Pepper<br/>56. Quantification of Nitrogen Transformations David D. Myrold<br/>57. Quantifying the Metabolic Activity of Soil- and Plant-Associated Microbes <br/>Guy R. Knudsen<br/>58. Soil Enzymes: Linking Proteomics and Ecological Process Steven D. <br/>Allison, Tracy B. Gartner, Keri Holland, <br/>Michael Weintraub, and Robert L. Sinsabaugh<br/>59. Use of Immunofluorescence Microscopy and Fluorescence In Situ <br/>Hybridization Combined with CMEIAS and Other <br/>Image Analysis Tools To Study the Autecology of Soil- and Plant-Associated <br/>Microbes Frank B. Dazzo, Michael <br/>Schmid, and Anton Hartmann<br/>60. Reporter Gene Systems Useful in Evaluating In Situ Gene Expression by <br/>Soil- and Plant-Associated Bacteria Johan <br/>Leveau, Joyce E. Loper, and Steven E. Lindow<br/>61. Identifying Microorganisms Involved in Specific In Situ Functions: <br/>Experimental Design Considerations for rRNA <br/>Gene-Based Population Studies and Sequence-Selective PCR Assays James Borneman, <br/>J. Ole Becker, Elizabeth <br/>Bent, Brian Lanoil, Brian McSpadden Gardener, Rabiu Olatinwo, Laura Presley, <br/>Alexandra J. Scupham, Lea <br/>Valinsky, and Bei Yin<br/>62. A Review of Mobile Gene Elements and Methods To Study Horizontal Gene <br/>Transfer in Environmental Microbial <br/>Communities Diana R. Nemergut, Tamar Barkay, and Jonna Coombs<br/>63. Research Methods for Microorganisms Interacting with Arthropods in Soil <br/>Ann E. Hajek<br/>64. Lipid Fingerprinting of Soil Microbial Communities Ana Lucia Cordova-<br/>Kreylos and Kate M. Scow<br/>SECTION VI SUBSURFACE AND LANDFILLS<br/>VOLUME EDITOR: AARON L. MILLS<br/>65. Overview of Issues in Subsurface and Landfill Microbiology Ronald W. <br/>Harvey, Joseph M. Suflita, Michael J. <br/>McInerney, and Aaron L. Mills<br/>66. Drilling, Coring, and Sampling Subsurface Environments Thomas L. Kieft, <br/>Tommy J. Phelps, and James K. <br/>Fredrickson<br/>67. Anaerobic Decomposition of Refuse in Landfills and Methane Oxidation in <br/>Landfill Covers Helene H. Hilger and <br/>Morton A. Barlaz<br/>68. Biogeochemistry of Aquifer Systems Isabelle M. Cozzarelli and Johanna V. <br/>Weiss<br/>69. Determining the Terminal Electron-Accepting Reaction in the Saturated <br/>Subsurface Richard L. Smith and Steve <br/>Harris<br/>70. Transport of Microorganisms in the Terrestrial Subsurface: In Situ and <br/>Laboratory Methods Ronald W. Harvey, Hauke <br/>Harms, and Lee Landkamer<br/>71. Oil Field Microbiology Michael J. McInerney, Gerrit Voordouw, Gary E. <br/>Jenneman, and Kerry L. Sublette<br/>72. Placement of Drinking Water Wells and Their Protection Marylynn V. Yates<br/>SECTION VII AEROBIOLOGY<br/>VOLUME EDITOR: LINDA D. STETZENBACH, SECTION EDITOR: MARK P. BUTTNER<br/>73. Introduction to Aerobiology Linda D. Stetzenbach<br/>74. Sampling for Airborne Microorganisms Sergey A. Grinshpun, Mark P. <br/>Buttner, and Klaus Willeke<br/>75. Analysis of Bioaerosol Samples Patricia Cruz and Mark P. Buttner<br/>76. Fate and Transport of Microorganisms in Air Alan Jeff Mohr<br/>77. Airborne Fungi and Mycotoxins Chin S. Yang and Eckardt Johanning<br/>78. Airborne Bacteria and Endotoxin Peter S. Thorne<br/>79. Legionellae and Legionnaires' Disease Barry S. Fields<br/>80. Airborne Viruses Syed A. Sattar and M. Khalid Ijaz<br/>81. Aerobiology of Agricultural Pathogens Estelle Levetin<br/>SECTION VIII BIOTRANSFORMATION AND BIODEGRADATION<br/>VOLUME EDITOR: RONALD L. CRAWFORD, SECTION EDITORS: JONATHAN R. LLOYD AND MING <br/>TIEN<br/>82. Overview: Biotransformation and Biodegradation Ronald L. Crawford<br/>83. Functional Gene Arrays for Microbial Community Analysis Terry J. Gentry, <br/>Christopher W. Schadt, Zhili He, and <br/>Jizhong Zhou<br/>84. Methods for Soil Metagenomics: Extraction and Cloning of Soil DNA <br/>Christian S. Riesenfeld, Lynn L. Williamson, <br/>and Jo Handelsman<br/>85. Using Genetic Algorithms To Optimize Functions of Microbial Ecosystems <br/>Frederik P. J. Vandecasteele, Thomas F. <br/>Hess, and Ronald L. Crawford<br/>86. Metagenomic Methods for the Identification of Active Microorganisms and <br/>Genes in Biodegradation Processes Don <br/>Cowan and William Stafford<br/>87. Proteomic Analysis of Extracellular Enzymes Produced by Wood-Degrading <br/>Fungi Ming Tien, Feng Liu, and Hasan <br/>Koc<br/>88. Current Progress in the Application of Mycoremediation to Soil Cleanup <br/>Richard T. Lamar and R. B. White<br/>89. Fungal Solid-State Fermentation Systems for Bioconversion of <br/>Lignocellulosic Biomass: Process Protocol and <br/>Applications Chundakkadu Krishna<br/>90. Characterization of Microeukaryota in Natural Environments Janice L. <br/>Strap<br/>91. Methods Useful in Assessing Biological and Chemical Activity of Low-<br/>Molecular-Weight Brown Rot Fungal <br/>Metabolites Jody Jellison, Barry Goodell, and Yuhui Qian<br/>92. Techniques for Studying Uncultured and Cultured Magnetotactic Bacteria <br/>Dirk Schuler and Dennis A. Bazylinski<br/>93. Growth of Electrode-Reducing Bacteria Daniel R. Bond<br/>94. Microbially Mediated Anaerobic Iron(II) Oxidation at Circumneutral pH <br/>Karrie A. Weber and John D. Coates<br/>95. Isolation, Enumeration, Growth, and Preservation of Acidophilic <br/>Prokaryotes Kevin B. Hallberg and D. Barrie <br/>Johnson<br/>96. Molecular Techniques for the Study of Toxic Metal Resistance Mechanisms in <br/>Bacteria Jon L. Hobman<br/>97. Synchrotron-Based Techniques for Monitoring Metal Transformations Kenneth <br/>M. Kemner and Shelly D. Kelly<br/>98. Techniques for Studying Microbial Transformations of Metals and <br/>Radionuclides Jonathan R. Lloyd, Terry J. <br/>Beveridge, Katherine Morris, David A. Polya, and David J. Vaughan<br/>99. Arsenate-Respiring Bacteria Chad W. Saltikov and Davin Malasarn<br/>100. Biotransformations of Manganese Bradley M. Tebo, Brian G. Clement, and <br/>Gregory J. Dick<br/>101. Microbial Fe(III) Reduction: Ecological and Physiological Considerations <br/>David E. Cummings and Timothy S. <br/>Magnuson |
